Publications

Journal Articles

Web of Science Times cited: 4,531, Average citations per item: 39.06, h-index: 37


*Graduate student/post-doctoral fellow supervised by Dr. Fregly

§High school student supervised by Dr. Fregly

†Corresponding author


PDF

Ao, D.*, Shourijeh, M.S.*, Patten, C., and Fregly, B.J.† (2020) Evaluation of synergy extrapolation for predicting unmeasured muscle excitations from measured muscle synergies. Frontiers in Computational Neuroscience 14, Article 108.


PDF

Arones, M.S.*, Shourijeh, M.S.*, Patten, C., and Fregly, B.J.† (2020) Musculoskeletal model personalization affects metabolic cost estimates for walking. Frontiers in Bioengineering and Biotechnology 8, Article 1358.


PDF

Febrer-Nafría, M.*, Pallarès-López, R., Fregly, B.J., and Font-Llagunes, J.M.† (2020) Comparison of different optimal control formulations for generating dynamically consistent orthosis-assisted crutch walking simulations. Mechanism and Machine Theory 154, 104031.


PDF

Michaud, F.*, Shourijeh, M.S.*, Fregly, B.J., and Cuadrado, J.† (2020) Do muscle synergies improve optimization prediction of muscle activations during gait? Frontiers in Computational Neuroscience 14, Article 54.


PDF

Pegg, E.C.†, Walter, J.*, D’Lima, D.D., Fregly, B.J., Gill, H.S., and Murray, D.W. (2020) Minimising tibial fracture after unicompartmental knee replacement: A probabilistic finite element study. Clinical Biomechanics 73, 46-54.


PDF

Serrancolí, G.†, Kinney, A.L.*, and Fregly, B.J. (2020) Influence of musculoskeletal model parameter values on prediction of accurate knee contact forces during walking. Medical Engineering & Physics 85, 35-47.


PDF

Shourijeh, M.S.*† and Fregly, B.J. (2020) Muscle synergies modify static optimization estimates of joint stiffness during walking. Journal of Biomechanical Engineering 142, 011011.


PDF

Shourijeh, M.S.*†, Mehrabi, N., McPhee, J., and Fregly, B.J. (2020) Editorial: Advances in musculoskeletal modeling and their application to neurorehabilitation. Frontiers in Neurorobotics 14, Article 65.


PDF

MacLeod, A.R., Serrancoli, G., Fregly, B.J., Toms, A.D., and Gill, H.S. (2019) The effect of plate design, bridging span, and fracture healing on the performance of high tibial osteotomy plates: An experimental and finite element study. Bone & Joint Research 7, 639-649.


PDF

Sauder, N.R.*, Allen, J.L., Ting, L.H., Kesar, T.M., and Fregly, B.J.† (2019) Computational design of FastFES treatment to improve propulsive force symmetry during post-stroke gait: a feasibility study. Frontiers in Neurorobotics 13, 80.


PDF

Bianco, N.A.*, Patten, C., and Fregly, B.J.† (2018) Can measured muscle synergies construct unmeasured muscle excitations? Journal of Biomechanical Engineering 40, 011011 (10 pages).


PDF

Eskinazi, I.* and Fregly, B.J.† (2018) A computational framework for simultaneous estimation of muscle and joint contact forces and body motion using optimization and surrogate modeling. Medical Engineering & Physics 54, 56-64.


PDF

Banks, C.L.*, Pai, M.M.*, McGuirk, T.E., Fregly, B.J., and Patten, C.† (2017) Methodological choices in muscle synergy analysis impact differentiation of physiological characteristics following storke. Frontiers in Computational Neuroscience 11, 78.


PDF

Meyer, A.J.*, Patten, C., and Fregly, B.J.† (2017) Lower extremity EMG-driven modeling of walking with automated adjustment of musculoskeletal geometry. PLoS ONE 12, e017969.


PDF

Meyer, A.J.*, Eskinazi, I.*, Jackson, J.N.*, Rao, A.V., Patten, C., and Fregly, B.J.† (2016) Muscle synergies facilitate computational prediction of subject-specific walking motions. Frontiers in Bioengineering and Biotechnology 4, 77.


PDF

De Groote, F.*†, Kinney, A.L.*, Rao, A.V., and Fregly, B.J. (2016) Evaluation of direct collocation optimal control problem formulations for solving the muscle redundancy problem. Annals of Biomedical Engineering 44, 2922-2236.


PDF

Eskinazi, I.* and Fregly, B.J.† (2016) An open-source toolbox for surrogate modeling of joint contact mechanics. IEEE Transactions on Biomedical Engineering 63, 269-277 (featured article on journal website).


PDF

Jackson, J.N.*, Hass, C.J., and Fregly, B.J.† (2016) Development of a subject-specific foot-ground contact model for gait. Journal of Biomechanical Engineering 138, 091002 (12 pages).


PDF

Serrancolí, G.*, Kinney, A.L.*, Fregly, B.J., and Font-Llagunes, J.M.† (2016) Neuromusculoskeletal model calibration significantly affects accuracy of predicted knee contact forces for walking. Journal of Biomechanical Engineering 138, 081001 (11 pages).


PDF

Eskinazi, I.* and Fregly, B.J.† (2015) Surrogate modeling of deformable joint contact using artificial neural networks. Medical Engineering & Physics 37, 885-891.


PDF

Fregly, B.J.†, Fregly, C.D.§, and Kim, B.T.§ (2015) Computational prediction of muscle moments during ARED squat exercise on the International Space Station. Journal of Biomechanical Engineering 137, 121005 (8 pages).


PDF

Jackson, J.J.*, Hass, C.J., and Fregly, B.J.† (2015) Residual elimination algorithm enhancements to improve foot motion tracking during forward dynamic simulations of gait. Journal of Biomechanical Engineering 137, 111002 (8 pages).


PDF

Mizu-uchi, H., Colwell, C.W., Flores-Hernandez, C., Fregly, B.J., Matsuda, S., Iwamoto, Y., and D’Lima, D.D.† (2015) Patient-specific computer model of dynamic squatting after total knee arthroplasty. Journal of Arthroplasty 30, 870-874.


PDF

Pizzolato, C., Lloyd, D.G.†, Sartori, M., Ceseracciu, E., Besier, T.F., Fregly, B.J., and Reggiani, M.† (2015) CEINMS: A toolbox to investigate the influence of different neural solutions on the prediction of muscle excitation and joint moments during dynamic motor tasks. Journal of Biomechanics 48, 3929-3936 (winner of the 2015 Australian and New Zealand Society of Biomechanics Publication of the Year Award).


PDF

Walter, J.P.*, Korkmaz, N., Fregly, B.J., and Pandy, M.G.† (2015) Contribution of tibiofemoral joint contact to net loads at the knee in gait. Journal of Orthopaedic Research 33, 1054-1060.


PDF

Roemmich, R.T., Fregly, B.J., and Hass, C.J.† (2014) Neuromuscular complexity during gait is not responsive to medication in persons with Parkinson's disease. Annals of Biomedical Engineering 42, 1901-1912


PDF

Walter J.P.*, Kinney, A.L.*, Banks, S.A., D’Lima, D.D., Besier, T.F., Lloyd, D.G., and Fregly, B.J.† (2014) Muscle synergies may improve optimization prediction of knee contact forces during walking. Journal of Biomechanical Engineering 136, 021031 (9 pages).


PDF

D’Lima, D.D.†, Fregly, B.J., and Colwell, C.W. (2013) Implantable sensor technology: measuring bone and joint biomechanics of daily life in vivo. Arthritis Research and Therapy 15, 203 (8 pages).


PDF

Gerus, P., Sartori, M., Besier, T.F., Fregly, B.J., Delp, S.L., Banks, S.A., Pandy, M.G., D’Lima, D.D., Lloyd, D.G.† (2013) Subject-specific knee joint geometry improves predictions of medial tibiofemoral contact forces. Journal of Biomechanics 46, 2778-2786.


PDF

Kinney, A.L.*, Besier, T.F., D'Lima, D.D., and Fregly, B.J.† (2013) Update on grand challenge competition to predict in vivo knee loads. Journal of Biomechanical Engineering 135, 021005 (4 pages).


PDF

Kinney, A.L.*, Besier, T.F., Silder, A., Delp, S.L., D’Lima, D.D., and Fregly, B.J.† (2013) Changes in in vivo knee contact forces through gait modification. Journal of Orthopaedic Research 31, 434-440.


PDF

Meyer, A.J.*, D’Lima, D.D., Besier, T.F., Lloyd, D.G., Banks, S.A., Colwell, C.W. Jr., and Fregly, B.J.† (2013) Are external knee load and EMG measures accurate indicators of internal knee contact forces during gait? Journal of Orthopaedic Research 31, 921-929.


PDF

Pegg, E.C., Walter, J.*, Mellon, S.J., Pandit, H.G., Murray, D.W., D’Lima, D.D., Fregly, B.J., and Gill, H.S.† (2013) Evaluation of factors affecting tibial bone strain after unicompartmental knee replacement. Journal of Orthopaedic Research 31, 821-828.


PDF

Rodriguez, K., Roemmich R., Cam, B.*, Fregly, B., and Hass, C.† (2013) Persons with Parkinson's disease exhibit decreased neuromuscular complexity during gait. Clinical Neurophysiology 124, 1390-1397.


PDF

Boninger, M.L.†, Cowan, R.E., and Fregly, B.J. (2012) Structures promoting research, training, and technology transfer in mobility: lessons learned from a visit to European centers. Journal of NeuroEngineering and Rehabilitation 9, 19 (5 pages).


PDF

Cowan, R.E.†, Fregly, B.J., Boninger, M.L., Chan, L., Rodgers, M.M., and Reinkensmeyer, D.J. (2012) Recent trends in assistive technology for mobility. Journal of NeuroEngineering and Rehabilitation 9, 20 (8 pages).


PDF

D’Lima, D.D.†, Fregly, B.J., Patil, S., Steklov, N., and Colwell, C.W. (2012) Knee joint forces: prediction, measurement, and significance. Proceedings of the Institution of Mechanical Engineers, Part H: Journal of Engineering in Medicine 226, 95-102.


PDF

Fregly, B.J.† (2012) Gait modification to treat knee osteoarthritis. HSS Journal 8, 45-48.



PDF

Fregly, B.J.†, Besier, T.F., Lloyd, D.G., Delp, S.L., Banks, S.A., Pandy, M.G., and D’Lima, D.D. (2012) Grand challenge competition to predict in vivo knee loads. Journal of Orthopaedic Research 30, 503-513 (research perspective article featured on journal cover; listed in Web of Science as a Highly Cited Paper “in the top 1% of its academic field based on a highly cited threshold for the field and publication year”).


PDF

Fregly, B.J.†, Boninger, M.L., and Reinkensmeyer, D.J. (2012) Personalized neuromusculoskeletal modeling to improve treatment of mobility impairments. Journal of NeuroEngineering and Rehabilitation 9, 18 (11 pages).


PDF

Reinkensmeyer, D.J.†, Bonato, P., Boninger, M.L., Chan, L., Cowan, R.E., Fregly, B.J., and Rodgers. M.M. (2012) Major trends in mobility technology research and development: overview of the results of the NSF-WTEC European study. Journal of NeuroEngineering and Rehabilitation 9, 22 (4 pages).


PDF

Vincent, K.R.†, Conrad, B.P., Fregly, B.J., and Vincent, H.K. (2012) The pathophysiology of osteoarthritis: a mechanical perspective on the knee joint. Physical Medicine & Rehabilitation 4, S3-S9.


PDF

Li, L.*, Patil, S., Steklov, N., Bae, W., Temple-Wong, M., D’Lima, D.D., Sah, R.L., and Fregly, B.J.† (2011) Computational wear simulation of patellofemoral articular cartilage during in vitro testing. Journal of Biomechanics 44, 1507-13.


PDF

Fregly, B.J.†, Marquez-Barrientos, C.*, Banks, S.A., and DesJardins, J.D. (2010) Increased conformity offers diminishing returns for total knee replacement wear. Journal of Biomechanical Engineering 132, 021007 (7 pages).


PDF

Lin, Y.C.*, Haftka, R.T., Queipo, N.V., and Fregly, B.J.† (2010) Surrogate articular contact models for computationally efficient multibody dynamic simulations. Medical Engineering & Physics 32, 584-594.


PDF

Lin, Y.C.*, Walter, J.P.*, Banks, S.A., Pandy, M.G., and Fregly, B.J.† (2010) Simultaneous prediction of muscle and contact forces in the knee during gait. Journal of Biomechanics 43, 945-952.


PDF

Walter, J.P.*, D’Lima, D.D., Colwell, C.W., and Fregly, B.J.† (2010) Decreased knee adduction moment does not guarantee decreased medial contact force during gait. Journal of Orthopaedic Research 28, 1348-1354.


PDF

Fregly, B.J.† (2009) Design of optimal treatments for neuromusculoskeletal disorders using patient-specific multibody dynamic models. International Journal of Computational Vision and Biomechanics 2, 145-154.


PDF

Fregly, B.J.†, D’Lima, D.D., and Colwell, C.W. (2009) Effective gait patterns for offloading the medial compartment of the knee. Journal of Orthopaedic Research 27, 1016-1021.


PDF

Hamai, S., Moro-oka, T., Miura, H., Shimoto, T., Higaki, H., Fregly, B.J., Iwamoto, Y., and Banks, S.† (2009) Knee kinematics in medial osteoarthritis during in vivo weight-bearing activities. Journal of Orthopaedic Research 27, 1555-1561.


PDF

Kim, H.J, Fernandez, J.W., Akbarshahi, M., Walter, J.P.*, Fregly, B.J., and Pandy. M.G.† (2009) Evaluation of predicted knee-joint muscle forces during gait using an instrumented knee implant. Journal of Orthopaedic Research 27, 1326-1331.


PDF

Koh, B.-I.*, Reinbolt, J.A.*, George, A.D., Haftka, R.T., and Fregly, B.J.† (2009) Limitations of parallel global optimization for large-scale human movement problems. Medical Engineering & Physics 31, 515-521.


PDF

Lin, Y.C.*, Queipo, N.V., Haftka, R.T., and Fregly, B.J.† (2009) Two-dimensional surrogate contact modeling for computationally efficient dynamic simulations of total knee replacements. Journal of Biomechanical Engineering 131, 041010 (8 pages).


PDF

D'Lima, D.D.†, Steklov, N, Fregly, B.J., Banks, S.A., and Colwell, C.W. (2008) In vivo contact stresses during activities of daily living after knee arthroplasty. Journal of Orthopaedic Research 26, 1549-1555.


PDF

Fregly, B.J.† (2008) Computational assessment of combinations of gait modifications for knee osteoarthritis rehabilitation. IEEE Transactions on Biomedical Engineering 55, 2104-2106.


PDF

Fregly, B.J.†, Banks, S.A., D’Lima, D.D., and Colwell, C.W. (2008) Sensitivity of knee replacement contact calculations to kinematic measurement errors. Journal of Orthopaedic Research 26, 1173-1179.


PDF

Fregly, B.J.†, Reinbolt, J.A.*, and Chmielewski, T.L. (2008) Evaluation of a patient-specific cost function to predict the influence of foot path on the knee adduction torque during gait. Computer Methods in Biomechanics and Biomedical Engineering 11, 63-71.


PDF

Moro-oka, T., Hamai, S., Miura, H., Shimoto, T., Higaki, H., Fregly, B.J., Iwamoto, Y., and Banks, S.† (2008) Dynamic activity dependence of in vivo normal knee kinematics. Journal of Orthopaedic Research 26, 428-434.


PDF

Reinbolt, J.A.*, Haftka, R.T., Chmielewski, T.L., and Fregly, B.J.† (2008) A computational framework to predict post-treatment outcome for gait-related disorders. Medical Engineering & Physics 30, 434-443.


PDF

Schache, A.G.†, Fregly, B.J., Crossley, K.M, Hinman, R.S., and Pandy, M.G. (2008) The effect of gait modification on the external knee adductor moment is reference frame dependent. Clinical Biomechanics 23, 601-608.


PDF

Verma, N.N., Kolb, E, Cole, B.J., Berkson, E, Garretson, R, Farr, J, and Fregly, B. (2008) The effects of medial meniscal transplantation techniques on intra-articular contact pressures. The Journal of Knee Surgery 21, 20-26.


PDF

Zhao, D.*, Sadoka, H., Sawyer, W.G., Banks, S.A., and Fregly, B.J.† (2008) Predicting knee replacement damage in a simulator machine using a computational model with a consistent wear factor. Journal of Biomechanical Engineering 130, 011004 (10 pages).


PDF

Fregly, B.J.†, Reinbolt, J.A.*, Rooney, K.L.*, Mitchell, K.H., and Chmielewski, T.L. (2007) Design of patient-specific gait modifications for knee osteoarthritis rehabilitation. IEEE Transactions on Biomedical Engineering 54, 1687-1695.

Download animations below:

Pre-training
Optimization with tighter tracking of pre-training data
Optimization with looser tracking of pre-training data
Post-training with attempted pre-training motion
Post-training with exaggerated optimized motion

PDF

Moro-oka, T., Hamai, S., Miura, H., Higaki., H., Fregly, B.J., Iwamoto, Y., Banks, S.A.† (2007) Can magnetic resonance imaging-derived bone models be used for accurate motion measurement with single-plane three-dimensional shape registration? Journal of Orthopaedic Research 25, 867-872.


PDF

Schutte, J.F.*, Haftka, R.T., and Fregly, B.J.† (2007) Improved global convergence probability using multiple independent swarms. International Journal for Numerical Methods in Engineering 71, 678-702.


PDF

Reinbolt, J.A.*, Haftka, R.T., Chmielewski, T.L., and Fregly, B.J.† (2007) Are patient-specific joint and inertial parameters necessary for accurate inverse dynamics analyses of gait? IEEE Transactions on Biomedical Engineering 54, 782-793.


PDF

Zhao, D.*, Banks, S.A., D’Lima, D.D., Colwell, C.W., and Fregly, B.J.† (2007) In vivo medial and lateral tibial loads during dynamic and high flexion activities. Journal of Orthopaedic Research 25, 593-602 (featured on the cover of this issue).


PDF

Zhao, D.*, Banks, S.A., Mitchell, K.H., D’Lima, D.D., Colwell, C.W., and Fregly, B.J.† (2007) Correlation between the knee adduction torque and medial contact force for a variety of gait patterns. Journal of Orthopaedic Research 25, 789-797 (listed in Web of Science as a Highly Cited Paper “in the top 1% of its academic field based on a highly cited threshold for the field and publication year”).


PDF

Zhao, D.*, Sawyer, W.G., and Fregly, B.J.† (2006) Computational wear prediction of UHMWPE in knee replacements. Journal of ASTM International 3, 45-50.


PDF

Koh, B.-I.*, George, A.D., Haftka, R.T., and Fregly, B.J.† (2006) Parallel asynchronous particle swarm optimization. International Journal for Numerical Methods in Engineering 67, 578-595.


PDF

Lin, Y.-C.*, Farr, J., Carter, K., and Fregly, B.J.† (2006) Response surface optimization for joint contact model evaluation. Journal of Applied Biomechanics 22, 120-130.


PDF

Banks, S.A.†, Fregly, B.J., Boniforti, F., Reinschmidt, C., and Romagnoli, S. (2005) Comparing in vivo kinematics of unicondylar and bi-unicondylar knee replacements. Knee Surgery, Sports Traumatology, Arthroscopy 13, 551-556.


PDF

Fregly, B.J.†, Rahman, H.*, and Banks, S.A. (2005) Theoretical accuracy of model-based shape matching for measuring natural knee kinematics with single-plane fluoroscopy. Journal of Biomechanical Engineering 127, 692-699.


PDF

Fregly, B.J.†, Sawyer, W.G., Harman, M.K., and Banks, S.A. (2005) Computational wear prediction of a total knee replacement from in vivo kinematics. Journal of Biomechanics 38, 305–314.


PDF

Hamilton, M.A., Sucec, M.C., Fregly, B.J., Banks, S.A., and Sawyer, W.G.† (2005) Quantifying multidirectional sliding motions in total knee replacements, Journal of Tribology 127, 280-286.


PDF

Harman, M.K.†, Banks, S.A., Fregly, B.J., Sawyer, W.G., and Hodge, W.A. (2005) Biomechanical mechanisms for damage: Retrieval analysis and computational wear predictions in total knee replacements. Journal of Mechanics in Medicine and Biology 5, 469-475.


PDF

Reinbolt, J.A.*, Schutte, J.F.*, Fregly, B.J.†, Haftka, R.T., George, A.D., and Mitchell, K.H. (2005) Determination of patient-specific multi-joint kinematic models through two-level optimization. Journal of Biomechanics 38, 621-626.


PDF

Schutte, J.F.*, Koh, B.-I.*, Reinbolt, J.A.*, Haftka, R.T., George, A.D., and Fregly, B.J.†(2005) Evaluation of a particle swarm algorithm for biomechanical optimization. Journal of Biomechanical Engineering 127, 465-474.

Click here to download Matlab source code for particle swarm optimization

PDF

Bei, Y.* and Fregly, B.J.† (2004) Multibody dynamic simulation of knee contact mechanics. Medical Engineering & Physics 26, 777-789.


PDF

Schutte, J.F.*, Reinbolt, J.A.*, Fregly, B.J.†, Haftka, R.T., and George, A.D. (2004) Parallel global optimization with the particle swarm algorithm. International Journal for Numerical Methods in Engineering 61, 2296-2315.


PDF

Bei, Y.*, Fregly, B.J.†, Sawyer, W.G., Banks, S.A., and Kim, N.H. (2004) The relationship between contact pressure, insert thickness, and mild wear in total knee replacements. Computer Modeling in Engineering & Sciences 6, 145-152.


PDF

Koh, B.I.*, Reinbolt, J.A.*, Fregly, B.J.†, and George, A.D. (2004) Evaluation of parallel decomposition methods for biomechanical optimizations. Computer Methods in Biomechanics and Biomedical Engineering 7, 215-225.


PDF

Fregly, B.J.†, Bei, Y.*, and Sylvester, M.E.* (2003) Experimental evaluation of an elastic foundation model to predict contact pressures in knee replacements. Journal of Biomechanics 36, 1659-1668.


PDF

Fregly, B.J.† and Sawyer, W.G. (2003) Estimation of discretization errors in contact pressure measurements, Journal of Biomechanics 36, 609-613.


PDF

Sawyer, W.G.†, Hamilton, M.A., Fregly, B.J., and Banks, S.A. (2003) Temperature modeling in a total knee joint replacement using patient-specific kinematics. Tribology Letters 15, 343-351.


PDF

Hansen E.A.†, Jorgensen L.V., Jensen K., Fregly B.J., Sjogaard G. (2002) Crank inertial load affects freely chosen pedal rate during cycling. Journal of Biomechanics 35, 277-285.


PDF

Fregly, B.J.†, Zajac, F.E., and Dairaghi, C. A. (2000) Bicycle drive system dynamics: theory and experimental validation. Journal of Biomechanical Engineering 122, 446-452.


PDF

Chèze, L.†, Fregly, B.J., and Dimnet, J. (1998) Determination of joint functional axes from noisy marker data using the finite helical axis. Human Movement Science 17, 1-15.


PDF

Fregly, B.J. and Zajac, F.E.† (1996) A state-space analysis of mechanical energy generation, absorption, and transfer during pedaling. Journal of Biomechanics 29, 81-90.


PDF

Fregly, B.J., Zajac, F.E.†, and Dairaghi, C.A. (1996) Crank inertial load has little effect on steady-state pedaling coordination. Journal of Biomechanics 29, 1559-1567.


PDF

Chèze, L., Fregly, B.J., and Dimnet, J.† (1995) A solidification procedure to facilitate kinematic analyses based on video system data. Journal of Biomechanics 28, 879-884.